| 1. |
2024
Chia-Li Han,Chi-Ting Lai,Aaron James Reyes, Hao-Chin Yang,Jin-Ying Lu,Shyang-Rong Shih, Kuen-Yuan Chen, Andrew N. Hoofnagle, Sung-Liang Yu, William Bocik, Tara Hiltke, Huan-Chi Chiu, Ching-Yi Wan, Henry Rodriguez, Victoria Zhang, Yu-Ju Chen .
Lessons learned: establishing a CLIA-equivalent laboratory for targeted mass spectrometry assays – navigating the transition from research to clinical practice
. Clinical Proteomics
.2024
|
|
| 2. |
2024
Yueh-Feng Lu,Ya-Hsuan Chang,Yi-Ju Chen,Min-Shu Hsieh,Mong-Wei Lin,Hsao-Hsun Hsu, Chia-Li Han, Yu-Ju Chen, Sung-Liang Yu, Jin-Shing Chen, Hsuan-Yu Chen.
Proteomic profiling of tumor microenvironment and prognosis risk prediction in stage I lung adenocarcinoma
. Lung Cancer
.2024
|
|
| 3. |
2024
Nhi Thao Ngoc Le,Chia-Li Han,Liling Delila,Ouada Nebie,Hsin-Tung Chien,Yu-Wen Wu, Luc Buée, David Blum, Thierry Burnouf.
Proteomics of human platelet lysates and insight from animal studies on platlet protein diffusion to hippocampus upon intranasal administration
. APL Bioeng
.2024
|
|
| 4. |
2024
Yang JC,Chen SP,Wang YF,Chang CH,Fuh JL,Chow LH, Han CL, Chen YJ, Wang SJ.
Cerebrospinal Fluid Proteome Map Reveals Molecular Signatures of Reversible Cerebral Vasoconstriction Syndrome
. Mol Cell Proteomics
.2024
;(23):100794
|
|
| 5. |
2023
Putri AD,Hsu MJ,Han CL,Chao FC,Hsu CH,Lorenz CD, Hsieh CM*.
Differential cellular responses to FDA-approved nanomedicines: an exploration of albumin-based nanocarriers and liposomes in protein corona formation
. Nanoscale
.2023
|
|
| 6. |
2023
Lee KY,Yang CC,Shueng PW,Wu SM,Chen CH,Chao YC, Chang YC, Han CL, Chuang HC, Lee CC, Lin CW*.
Downregulation of TAZ elicits a mitochondrial redox imbalance and ferroptosis in lung epithelial cells exposed to diesel exhaust particles
. Ecotoxicol Environ Saf.
.2023
|
|
| 7. |
2022
Putri D.U.,Feng PH,Lin CF,Haryana S.M.,Soesatyo M.H.N.E.,Lee KY, Han CL.
Proteomic Networks Associated with Tumor-Educated Macrophage Polarization and Cytotoxicity Potentiated by Heat-Killed Tuberculosis
. Sci Rep
.2022
|
|
| 8. |
2022
Hsiao TC,Han CL,Yang TT,Lee YL,Shen YF,Jheng YT, Lee CH, Chang JH, Chung KF, Kuo HP, Chuang HC*.
Importance of surface charge of soot nanoparticles in determining inhalation toxicity in mice
. Environ Sci Pollut Res Int .
.2022
|
|
| 9. |
2022
Han CL,Ho KF,Ho SC,Chuang HC.
Editorial: Managing chronic obstruction pulmonary disease: From translational research to public health practice
. Front Med
.2022
;(9):965759
|
|
| 10. |
2021
Chen XY,Feng PH,Han CL,Jheng YT,Wu CD,Chou HC, Chen YY, Wu SM, Lee KY, Kou HP, Chung KF, Hsiao TC, Chen KY, Ho SC, Chang TY, Chuang HC.
Alveolar epithelial inter-alpha-trypsin inhibitor heavy chain 4 deficiency associated with senescence-regulated apoptosis by air pollution
. Environmental Pollution
.2021
;(278):116863
|
|
| 11. |
2021
Han CL,Chen XR,Lan Albert,Hsu YL,Wu PS,Hung PF, Hung CL, Pan SH.
N-glycosylated GPNMB ligand independently activates mutated EGFR signaling and promotes metastasis in NSCLC
. Cancer Sci.
.2021
;(112):1911-1923
|
|
| 12. |
2021
Jheng YT,Putri D. U.,Chuang HC,Lee KY,Chou HC,Wang SY, Han CL.
Prolonged Exposure to Traffic-Related Particulate Matter and Gaseous Pollutants Implicate Distinct Molecular Mechanisms of Lung Injury in Rats
. Particle and Fibre Toxicology
.2021
;(18):24
|
|
| 13. |
2021
Shih HJ,Chang CY,Huang IT,Tsai PS,Han CL,Huang CJ.
Testicular torsion–detorsion causes dysfunction of mitochondrial oxidative phosphorylation
. Andrology
.2021
;(9):1902-1910
|
|
| 14. |
2021
Chen TT,Wu SM,Chen KY,Tseng CH,Ho SC,Chuang HC, Feng PH, Liu WT, Han CL, Huang WC, Yeh YK, Lee KY.
Suppressor of variegation 3-9 homologue 1 impairment and neutrophil-skewed systemic inflammation are associated with comorbidities in COPD
. BMC Pulm Med
.2021
;(21):276
|
|
| 15. |
2021
Chang JW,Lee YL,Laiman V,Han CL,Jheng YT,Lee KY, Yeh CT, Kuo HP, Chung KF, Heriyanto DS, Hsiao TC, Wu SM, Ho SC, Chuang KJ, Chuang HC*.
Air pollution-regulated E-cadherin mediates contact inhibition of proliferation via the Hippo signaling pathways in emphysema
. Chemico-Biological Interactions
.2021
;(351):109763
|
|
| 16. |
2020
Chen YJ,Roumeliotis TI,Chang YH,Chen CT,Han CL,Lin MH, Chen HW, Chang GC, Chang YL, Wu CT, Lin MW, Hsieh MS, Wang YT, Chen YR, Ionassen I, Ghavidel FZ, Lin ZS, Lin KT, Chen CW, Sheu PY, Hung CT, Huang KC, Yang HC, Lin PY, Yen TC, Lin YW, Jen-Hung Wang JH, Raghav L, Lin CY, Chen YS, Wu PS, Lai CT, Weng SH, Su KY, Chang WH, Tsai PY, Robles AI, Rodriguez H, Hsiao YJ, Chang WH, Sung TY*, Chen JS*, Yu SL*, Choudhary JS*, Chen HY*, Yang PC*, Chen YJ*.
Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression
. Cell
.2020
;(182):226-244
|
|
| 17. |
2020
Han CL,Sheng TC,Wang SY,Chen YH,Kang JH.
Serum proteome profiles revealed dysregulated proteins and mechanisms associated with fibromyalgia syndrome in women
. Scientific Reports
.2020
;(10):12347
|
|
| 18. |
2019
Chien CW,Lo YS,Wu HY,Hsuan Y,Lin CK,Chen YJ, Lin W, Han CL.
Transcriptomic and Proteomic Profiling of Human Mesenchymal Stem Cell Derived from Umbilical Cord in the Study of Preterm Birth
. Proteomics Clin Appl.
.2019
|
|
| 19. |
2019
Putri DU,Chiumia FK,Jheng YT,Han CL.
The Role of Proteomics for Dissecting Aberrant Molecular Signaling Pathways upon Egfr-Tki Treatments in Non-Small Cell Lung Cancer
. Proteomics Bioinformatics Curr Res
.2019
;(1):4-16
|
|
| 20. |
2018
Putri DU,Feng PH,Hsu YH,Lee KY,Jiang FW,Kuo LW, Chen YJ, Han CL.
Chemotherapy Immunophenoprofiles in Non-small-cell Lung Cancer by Personalized Membrane Proteomics
. Proteomics Clin. Appl.
.2018
;(12):x-x
|
|
| 21. |
2018
Chang CW,Chen YS,Tsay YG,Han CL,Chen YJ,Yang CC, Hung KF, Lin CH, Huang TY, Kao SY, Lee TC, Lo JF.
ROS-independent ER stress-mediated NRF2 activation promotes warburg effect to maintain stemness-associated properties of cancer-initiating cells
. Cell Death Dis.
.2018
;(9):194-207
|
|
| 22. |
2018
Feng PH,Yu CT,Chen KY,Luo CS,Wu SM,Liu CY, Kuo LW, Chan YF, Chen TT, Chang CC, Lee CN, Chuang HC, Lin CF, Han CL, Lee WH, Lee KY*.
S100A9+ MDSC and TAM-mediated EGFR-TKI resistance in lung adenocarcinoma: the role of RELB
. Oncotarget
.2018
;(9):7631-7643
|
|
| 23. |
2018
Feng PH,Chen KY,Huang YC,Luo CS,Wu SM,Chen TT, Lee CN, Yeh CT, Chuang HC, Han CL, Lin CF, Lee WH, Kuo CH, Lee KY*.
Bevacizumab Reduces S100A9+ MDSC Linked to Intracranial Control in Patients with EGFR Mutant Lung Adenocarcinoma
. J Thorac Oncol.
.2018
;(x):x-x
|
|
| 24. |
2018
Wu HY,Kuo PC,Wang YT,Lin HT,Roe AD,Wang BY, Han CL, Hyman BT, Chen YJ, Tai HC.
β-Amyloid Induces Pathology-Related Patterns of Tau Hyperphosphorylation at Synaptic Terminals
. J Neuropathol Exp Neurol.
.2018
;(77):814-826
|
|
| 25. |
2018
Weldemariam MM,Han CL,Shekari F,Kitata RB,Chuang CY,Hsu WT, Kuo HC, Choong WK, Sung TY, He FC, Chung MCM, Salekdeh GH, Chen YJ.
Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins
. J. Proteome Res.
.2018
|
|
| 26. |
2018
Shekari F,Han CL,Lee J,Mirzaei M,Gupta V,Haynes PA, Lee B, Baharvand H, Chen YJ, Hosseini Salekdeh G.
Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports.
. Expert Rev Proteomics
.2018
|
|
| 27. |
2018
Chen WT,Hsu WT,Yen MH,Changou CA,Han CL,Chen YJ, Cheng JY, Chang TH, KS Lee, Ho HC.
Alteration of mesenchymal stem cells polarity by laminar shear stimulation promoting β-catenin nuclear localization
. Biomaterials
.2018
;(190-191):1-10
|
|
| 28. |
2017
Shekari F ,Hossein N,Larijani MR ,Han CL,Baharvand H ,Chen YJ, Salekdeh GH.
Proteome analysis of human embryonic stem cells organelles
. Journal of Proteomics
.2017
;(162):108-118
|
|
| 29. |
2017
Hung CL,Pan SH,Han CL,Chang CW,Hsu YL,Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP.
Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic
. J. Proteome Res.
.2017
;(16):3504-3513
|
|
| 30. |
2017
Tsai MT,Chen YJ,Chen CY,Tsai MH,Han CL,Chen YJ, Mersmann HJ, Ding ST.
Identification of Potential Plasma Biomarkers for Nonalcoholic Fatty Liver Disease by Integrating Transcriptomics and Proteomics in Laying Hens
. J. Nutr.
.2017
;(147):293-303
|
|
| 31. |
2016
Chia-Ling Chen,Yueh-Ying Wu,Chiou-Feng Lin,Chih-Feng Kuo,Chia-Li Han,Shuying Wang, Woei-Jer Chuang, Chiu-Yueh Chen, Jiunn-Jong Wu, Pei-Jane Tsai, Ching-Chuan Liu & Yee-S.
Streptococcal pyrogenic exotoxin B inhibits apoptotic cell clearance by macrophages through protein S cleavage
. Scientific Reports
.2016
;(6):1-14
|
|
| 32. |
2015
Che TF,Lin CW,Wu YY,Chen YJ,Han CL,Chang YL, Wu CT, Hsiao TH, Hong TM, Yang PC.
Mitochondrial translocation of EGFR regulates mitochondria dynamics and promotes metastasis in NSCLC
. Oncotarget
.2015
;(6):37349-37366
|
|
| 33. |
2014
Chang CW,Chen YS,Chou SH,Han CL,Chen YJ,Yang CC, Huang CY, Lo JF.
Distinct Subpopulations of Head and Neck Cancer Cells with Different Levels of Intracellular Reactive Oxygen Species Exhibit Diverse Stemness
. Cancer Res.
.2014
;(74):6291-6305
|
|
| 34. |
2014
Fathia A,Hatamic M,Vakiliana H,Han CL,Chen YJ,Baharvand H, Salekdeh GH.
Quantitative proteomics analysis highlights the role of redox hemostasis and energy metabolism in human embryonic stem cell differentiation to neural cells
. J Proteomics
.2014
;(101):1-14
|
|
| 35. |
2013
Chiang SC,Han CL,Yu KH,Chen YJ,Wu KP.
Prioritization of cancer marker candidates based on the immunohistochemistry staining images deposited in the human protein atlas
. PLoS ONE
.2013
;(8):e81079
|
|
| 36. |
2013
Huang TK,Han CL,Lin SI,Chen YJ,Tsai YC,Chen YR, Chen JW, Lin WY, Chen PM, Liu TY, Chen YS, Sun CM, Chiou TJ.
Identification of Downstream Components of Ubiquitin-Conjugating Enzyme PHOSPHATE2 by Quantitative Membrane Proteomics in Arabidopsis Roots
. Plant Cell
.2013
;(25):4044-4060
|
|
| 37. |
2013
Ho H,Lee K,Fu YJ,Shih HT,Tseng CY,Chung CC, Han CL, Chen YJ.
An iTRAQ Proteomic Study Reveals an Association between Diet-Induced Enhanced Fatty Acid Metabolism and the Development of Glucose Intolerance in Prediabetic Mice
. J. Proteome Res.
.2013
;(12):1120-1133
|
|
| 38. |
2013
Lu YW,Chien CW,Lin PC,Huang LD,Chen CY,Wu SW, Han CL, Khoo KH, Lin CC, Chen YJ.
BAD-Lectins: Boronic Acid-Decorated Lectins with Enhanced Binding Affinity for the Selective Enrichment of Glycoproteins
. Anal. Chem.
.2013
;(85):8268-8276
|
|
| 39. |
2013
Lin PC,Yu CC,Wu HT,Lu YW,Han CL,Su AK, Chen YJ, Lin CC.
A chemically functionalized magnetic nanoplatform for rapid and specific biomolecular recognition and separation
. Biomacromolecules
.2013
;(14):160-168
|
|
| 40. |
2011
Han CL,Chen JS,Chan EC,Wu CP,Yu KH,Chen KT, Tsou CC, Tsai CF, Chien CW, Kuo YB, Lin PY, Yu JS, Hsueh C, Chen MC, Chan CC, Chang YS, Che.
An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer
. Mol. Cell. Proteomics
.2011
;(10):1-15
|
|
| 41. |
2011
Fan CW,Chan CC,Chen KT,Twu J,Huang YS,Han CL, Chen YJ, Yu JS, Chang YS, Kuo YB, Chan EC.
Identification of SEC61β and its autoantibody as biomarkers for colorectal cancer
. Clin Chim Acta.
.2011
;(412):887-893
|
|
| 42. |
2010
Chen JS,Chen KT,Fan CW,Han CL,Chen YJ,Yu JS, Chang YS, Chien cW, Wu CP, Hung RP, Chan EC.
Comparison of Membrane Fraction Proteomic Profiles of Normal and Cancerous Human Colorectal Tissues with Gel-assisted Digestion and iTRAQ Labeling Mass Spectrometry
. FEBS J
.2010
;(277):3028-3038
|
|
| 43. |
2010
Lin SL,Chien CW,Han CL,Chen SW,Kao SH,Chen YJ, Liao F.
Temporal Proteomics Profiling of Lipid Rafts in CCR6-activated T Cells Reveals the Integration of Actin Cytoskeleton Dynamics
. J. Proteome Res.
.2010
;(9):283-297
|
|